2.1 Types of WFC3 Files
Science data taken in orbit by WFC3 are received from the Space Telescope Data Capture Facility at Goddard Space Flight Center and sent to the STScI Operational Pipeline Unified System (OPUS) pipeline, where the data are unpacked, keyword values extracted from the telemetry stream, and the science data reformatted and repackaged into raw (uncalibrated) FITS files by the Generic Conversion process (see Section 1.1.1 of the Introduction to the HST Data Handbooks). All WFC3 science data products are two-dimensional images stored in Multi-Extension FITS format files. For each exposure taken with WFC3, there is one FITS file with a unique 9-character rootname followed by a 3-character suffix: rootname_xxx.fits. The rootname identifies the observation and the suffix denotes what type of file it is (see Chapter 5 of the Introduction to the HST Data Handbooks for more details on HST file names).
WFC3 data files are given the following definitions:
An exposure is a single multi-extension FITS file, the atomic unit of HST data.
- A dataset is a collection of files having a common rootname.
- An association is a set of exposures that can be meaningfully combined into a single product (e.g. a set of dithered exposures, or a series of CR-SPLIT exposures)
- A sub-product is a dataset created by combining a subset of the exposures in an association.
- A product is a dataset created by combining sub-products of an association.
2.1.1 Data Files and Suffixes
The suffixes used for WFC3 raw and calibrated data products are described in Table 2.1 and closely mimic those used by ACS and NICMOS.
Table 2.1: WFC3 data file suffixes.
File Suffix | Description | Units |
---|---|---|
Uncalibrated | ||
_raw | raw data | DN |
Distortion Corrected | ||
_drz | UVIS and IR calibrated exposure, corrected for geometric distortion | e¯/s |
_drc | UVIS calibrated exposure, corrected for geometric distortion and CTE | e¯/s |
Intermediate | ||
_rac_tmp | UVIS CTE corrected raw data, no other calibration | DN |
_blv_tmp | overscan-trimmed UVIS exposure | DN |
_blc_tmp | overscan-trimmed UVIS exposure, CTE-corrected exposure | DN |
_crj_tmp | uncalibrated, CR-rejected combined | DN |
_crc_tmp | uncalibrated, CR-rejected, CTE-corrected | DN |
_ima | calibrated intermediate IR multiaccum image | e¯/s |
Calibrated | ||
_flt | UVIS calibrated exposure, no CTE correction | e¯ |
_flc | UVIS calibrated exposure including CTE correction | e¯ |
_flt | IR calibrated exposure | e¯/s |
_flt | IR calibrated exposure (SCAN mode) | e¯ |
_crj | UVIS calibrated, CR-rejected image | e¯ |
_crj | IR calibrated, CR-rejected image | e¯/s |
_crc | UVIS calibrated, CR-rejected, CTE-corrected image | e¯ |
Auxiliary | ||
_asn | association file for observation set | |
_spt | telescope and WFC3 telemetry and engineering data | |
_trl | trailer file with processing history and messages |
The initial input files to the calibration program calwf3 are the raw files (raw) from Generic Conversion and the association (asn) table, if applicable, for the complete observation set.
For UVIS images, temporary files are created once bias levels are subtracted and the overscan regions are trimmed. These temporary files have suffixes which also relate whether they have been corrected for Charge Transfer Efficiency (CTE) trailing. Files which have been corrected for CTE effects have a "c" as the third letter in their suffix. For example, "_blv_tmp" files have completed the BIASCORR stage, but were not corrected for CTE like the "_blc_tmp" files. The CTE correction is the very first step in the correction process for UVIS datasets. If the save option is specified when calwf3 is called on a "_raw" image, then an intermediate "_rac" file will also be saved. This contains the original data with just the CTE correction applied.
The final output files will be renamed with the "_flt" or "_flc" suffixes after the standard calibrations (flat fielding, dark subtraction, etc.) are complete. The "_blv_tmp" files serve as input for cosmic ray rejection, if required. For UVIS CR-SPLIT
and REPEAT-OBS
exposures, a temporary CR-combined image is created and then renamed with either the "_crj" or "_crc" suffix once basic calibrations of that image are complete. With the addition of the CTE correction, which is the very first step, the pipeline now follows two distinct lines of processing, one with the CTE correction applied and one without. Users running raw data through calwf3, which has PCTECORR set to PERFORM, should expect to see both sets of calibrated files when the tasks are complete.
For the IR detector, an intermediate MultiAccum (ima) file is the result after all calibrations are applied (dark subtraction, linearity correction, flat fielding, etc.) to all of the individual readouts of the IR exposure. A final step in calwf3 processing of IR exposures produces a combined, CR-cleaned, image from the individual readouts, which is stored in an "_flt" product file.
The final products of the calwf3 pipeline are not corrected for geometric distortion. AstroDrizzle is used to correct all WFC3 images for geometric distortion, whether they are taken as single exposures or as part of an association. AstroDrizzle is distributed as part of the Drizzlepac package, used for aligning and combining all HST images. For CR-SPLIT
and REPEAT-OBS
, AstroDrizzle supersedes the calwf3 cosmic-ray rejection processing and uses the individual "_flt" or "_flc" files directly as input, performing cosmic-ray rejection in the process of producing the final drizzled image from multiple exposures (see Table 2.2). This has significant advantages in cases where small numbers of CR-SPLIT
images were obtained at a small number of different dither positions, because AstroDrizzle will use all the information from all the input files to produce the best cosmic-ray rejection. The resulting drizzled images should generally be useful for science, although subsequent reprocessing off-line may be desirable in some cases to optimize the data for specific scientific applications.
Table 2.2: The calwf3 and AstroDizzle input and output products.
UVIS | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
CALWF3 | AstroDrizzle | |||||||||
Output | CTE Corrected? | CR Rejected? | Distortion Corrected? | Input | Output | CTE Corrected? | CR Corrected? | Distortion Corrected? | ||
Single | raw | flt | No | No | No | flt | drz | No | No | Yes |
flc | Yes | No | No | flc | drc | Yes | No | Yes | ||
CR-SPLIT | raw, asn | crj | No | Yes | No | flt, asn | drz | No | Yes | Yes |
crc | Yes | Yes | No | flc, asn | drc | Yes | Yes | Yes | ||
RPT-OBS | raw, asn | crj | No | Yes | No | flt, asn | drz | No | Yes | Yes |
crc | Yes | Yes | No | flc, asn | drc | Yes | Yes | Yes | ||
Dither Pattern | raw, asn | flt | No | No | No | flt, asn | drz | No | Yes | Yes |
flc | Yes | No | No | flc, asn | drc | Yes | Yes | Yes | ||
IR | ||||||||||
CALWF3 | AstroDrizzle | |||||||||
Image Type | Input | Output | CTE Corrected? | CR Rejected? | Distortion Corrected? | Input | Output | CTE Corrected? | CR Corrected? | Distortion Corrected? |
Single | raw | ima | N/A | No | No | flt | drz | N/A | Yes | Yes |
flt | N/A | Yes | No | |||||||
RPT-OBS | raw, asn | crj | N/A | Yes | No | flt, asn | drz | N/A | Yes | Yes |
Dither Pattern | raw, asn | flt | N/A | Yes | No | flt, asn | drz | N/A | Yes | Yes |
For the UVIS channel, when there are multiple exposures, AstroDrizzle supersedes the calwf3 cosmic-ray rejection processing. It uses the "_flt" and "_flc" files produced by calwf3 as input, and performs cosmic-ray rejection in the process of producing the final distortion-corrected drizzled image.
For further information on drizzle, please refer to the DrizzlePac Handbook for http://www.stsci.edu/files/live/sites/www/files/home/scientific-community/software/drizzlepac/_documents/drizzlepac-handbook.pdf.
2.1.2 Auxiliary Data Files
Association Tables (asn)
Association tables are useful for keeping track of the complex set of relationships that can exist between exposures taken with WFC3, especially with REPEAT-OBS
, CR-SPLIT
, and dithered exposures. Images taken at a given dither position may be additionally CR-SPLIT
into multiple exposures (e.g., UVIS observations). In these cases, associations are built to describe how each exposure relates to the desired final product. As a result, WFC3 association tables can be used to create one or more science products from the input exposures. The relationships defined in the association tables determine how far through the calibration pipeline the exposures are processed and when the calibrated exposures get combined into sub-products for further calibration.
An association file has a single extension that is a binary FITS table. That table has three columns:
MEMNAME
, the member nameMEMTYPE
, the role which that member plays in the associationMEMPRSNT
, a boolean value for whether the member is present or not.
The different MEMTYPE values are summarized in Table 2.3.
Table 2.3: Exposure types in WFC3 associations. The suffix "n" is appended to the MEMTYPE to denote multiple sets are present within a single association.
MEMTYPE | DESCRIPTION |
---|---|
EXP-CRJ | Input CR-SPLIT exposure (single set) |
EXP-CRn | Input CR-SPLIT exposure for CR-combined image n (multiple sets) |
PROD-CRJ | CR-combined output product (single set) |
PROD-CRn | CR-combined output product n (multiple sets) |
EXP-RPT | Input REPEAT-OBS exposure (single set) |
EXP-RPn | Input REPEAT-OBS exposure for repeated image n (multiple sets) |
PROD-RPT | REPEAT-OBS combined output product (single set) |
PROD-RPn | REPEAT-OBS combined output product n (multiple sets) |
EXP-DTH | Input dither exposure |
PROD-DTH | Dither-combined output product |
A sample association table for a two-position dithered observation with CR-SPLIT=2
is presented in Table 2.4 This example shows how both MEMNAME
and MEMTYPE
are used to associate input and output products. The MEMTYPE
for each component of the first CR-SPLIT
exposure, IxxxxxECQ and IxxxxxEGQ, are given the type EXP-CR1
. The sub-product Ixxxxx011 is designated in the table with a MEMTYPE
of PROD-CR1
. The last digit of the product filename corresponds to the output product number in the MEMTYPE
. A designation of zero for the last digit in the filename is reserved for the dither-combined product.
The column MEMPRSNT
indicates whether a given file already exists. For example, if cosmic ray rejection has not yet been performed by calwf3, the PROD-CRn
files will have a MEMPRSNT
value of "no". The sample association table in Table 2.4 shows the values of MEMPRSNT
prior to calwf3 processing.
Table 2.4: Sample association table ixxxxx010_asn.
MEMNAME | MEMTYPE | MEMPRSNT |
---|---|---|
IxxxxxECQ | EXP-CR1 | Yes |
IxxxxxEGQ | EXP-CR1 | Yes |
Ixxxxx011 | PROD-CR1 | No |
IxxxxxEMQ | EXP-CR2 | Yes |
IxxxxxEOQ | EXP-CR2 | Yes |
Ixxxxx012 | PROD-CR2 | No |
Ixxxxx010 | PROD-DTH | No |
Table 2.5: Extensions in UVIS _flt or _flc files after standard processing with calwf3 and AstroDrizzle.
Extension Number | Extension Name | Extension Description | Extension Type | Extension Dimensions | Data Format | Imset/Chip/Axis |
---|---|---|---|---|---|---|
0 | Primary | Global Header | PrimaryHDU | ( ) | ||
1 | [SCI,1] | Science Image | Image | 4096 × 2051 | Float32 | Imset 1 = UVIS2 (CHIP2) |
2 | [ERR,1] | Error Array | Image | 4096 × 2051 | Float32 | |
3 | [DQ,1] | Data Quality Array | Image | 4096 × 2051 | Int16 | |
4 | [SCI,2] | Science Image | Image | 4096 × 2051 | Float32 | Imset 2 = UVIS1 (CHIP1) |
5 | [ERR,2] | Error Array | Image | 4096 × 2051 | Float32 | |
6 | [DQ,2] | Data Quality Array | Image | 4096 × 2051 | Int16 | |
7 | [D2IMARR,1] | Filter-independent distortion correction (lithography) | Image | 64 × 32 | Float32 | CHIP2, X axis |
8 | [D2IMARR,2] | Image | 64 × 32 | Float32 | CHIP2, Y axis | |
9 | [D2IMARR,3] | Image | 64 × 32 | Float32 | CHIP1, X axis | |
10 | [D2IMARR,4] | Image | 64 × 32 | Float32 | CHIP1, Y axis | |
11 | WCSDVARR | Filter-dependent distortion correction | Image | 64 × 32 | Float32 | CHIP2, X axis |
12 | WCSDVARR | Image | 64 × 32 | Float32 | CHIP2, Y axis | |
13 | WCSDVARR | Image | 64 × 32 | Float32 | CHIP1, X axis | |
14 | WCSDVARR | Image | 64 × 32 | Float32 | CHIP1, Y axis | |
15 | WCSCORR | WCS change log | BINTABLE | 14R × 24C | ||
16+ | HDRLET | additional WCS solutions | HeaderletHDU | ( ) |
Note 1: All UVIS filters except for the quad filters have a calibrated filter-dependent distortion correction and associated NPOLFILE. Images produced by the calwf3 pipeline for these 52 filters have 15 extensions; images for the quad filters will have only 11 extensions (they have no WCSDVARR).
Note 2: With the release in Dec 2019 of improved astrometric corrections for WFC3, additional "headerlet" extensions, which encapsulate WCS information, will be appended to the flt/flc files. The astrometric improvements primarily reduce the pointing errors present in WFC3 data (generally a few tenths of an arcsecond), but do NOT affect the distortion solution. Several astrometric solutions may be available for a given dataset, each stored in its own headerlet. Products retrieved from the MAST archive will have the best solution applied by default.
In order to create a geometrically correct, drizzle-combined product, PROD-DTH
exposures are combined only with AstroDrizzle, which executes after calwf3 has finished processing all members. PROD-RPT
and PROD-CRJ
products are combined using wf3rej and all output files have the “cr” extension.
Trailer Files (trl)
Each task used by calwf3 creates messages during processing that describe the progress of the calibration and are sent to STDOUT. In calibration pipelines written for other HST instruments, trailer files were created by simply redirecting the STDOUT to a file. Because multiple output files can be produced in a single run of calwf3, creating trailer files presents a unique challenge. Each task within calwf3 must decide which trailer file should be appended with comments and automatically open, populate, and close each trailer file.
Note that calwf3 will always overwrite information in trailer files from previous runs of calwf3
while preserving any comments generated by Generic Conversion. This ensures that the trailer files accurately reflect the most recent processing performed. The string "CALWF3BEG
" will mark the first comment added to the trailer file. If a trailer file already exists, calwf3 will search for this string to determine where to append processing comments. If it is not found, the string will be written at the end of the file and all comments will follow. Thus any comments from previous processing are overwritten and only the most current calibrations are recorded.
As each image is processed, an accompanying trailer file with the "*_trl.fits" suffix will be created. Further processing with calwf3 will concatenate all trailer files associated with an output product into a single file. Additional messages will then be appended to this concatenated file. This duplicates some information across multiple trailer files but ensures that for any product processed within the pipeline, the trailer file will contain processing comments from all the input files.
Linking trailer files together can result in multiple occurrences of the "CALWF3BEG
" string. Only the first, however, determines where calwf3 will begin overwriting comments if an observation is reprocessed.
Support Files (spt)
The support files contain information about the observation and engineering data from the instrument and spacecraft that was recorded at the end of the observation. A support file can have multiple FITS image extensions within the same file. Each extension holds an integer (16-bit) image containing the data that populates the *_spt.fits header keyword values.
-
WFC3 Data Handbook
- • Acknowledgments
- • What's New in This Revision
- Preface
- Chapter 1: WFC3 Instruments
- Chapter 2: WFC3 Data Structure
- Chapter 3: WFC3 Data Calibration
- Chapter 4: WFC3 Images: Distortion Correction and AstroDrizzle
- Chapter 5: WFC3-UVIS Sources of Error
- Chapter 6: WFC3 UVIS Charge Transfer Efficiency - CTE
-
Chapter 7: WFC3 IR Sources of Error
- • 7.1 WFC3 IR Error Source Overview
- • 7.2 Gain
- • 7.3 WFC3 IR Bias Correction
- • 7.4 WFC3 Dark Current and Banding
- • 7.5 Blobs
- • 7.6 Detector Nonlinearity Issues
- • 7.7 Count Rate Non-Linearity
- • 7.8 IR Flat Fields
- • 7.9 Pixel Defects and Bad Imaging Regions
- • 7.10 Time-Variable Background
- • 7.11 IR Photometry Errors
- • 7.12 References
- Chapter 8: Persistence in WFC3 IR
- Chapter 9: WFC3 Data Analysis
- Chapter 10: WFC3 Spatial Scan Data